- #MAC ON LINUX MOL HOW TO#
- #MAC ON LINUX MOL FULL#
the commands written after uppercase "-J". Jmol.jar fileName -J scriptCommands -s scriptFileName -j scriptCommands irrespective of their actual order in the command line, they will always be run in this order: You can combine loading a molecular file, running a script file and running script commands (only Jmol 11.7.x and later):. To run a script file immediately after opening Jmol, use:. To load a molecular file immediately after opening Jmol, use:. Java -jar Jmol.jar -help Loading files and running scripts To show help for command-line options, use either of these:. Provided you have in the same folder/directory the batch file or shell script adequate for your OS (included with Jmol distribution). Otherwise, the general syntax for all cases isīut the 'java -jar' part will be omitted for simplicity (except where it is unavoidable). If you want to attach a Jmol icon to your preferred method of opening Jmol, you can get one from the Recycling Corner. If you have trouble running the application, see also Troubleshooting. Double-click on a molecular coordinates file whose extension has been previously associated to Jmol ( HowTo). #MAC ON LINUX MOL FULL#
From the command line: java -jar Jmol.jar (of course, issued from the folder/directory where Jmol.jar is, or else pointing to it with a full path).Execute one of the batch files/shell scripts that are part of Jmol distribution (Windows, MacOS, Linux, Unix).Click on a previously created Start menu entry (Windows terminology - HowTo).Click on a previously created shortcut (Windows terminology - HowTo).To open the application, follow these instructions:
#MAC ON LINUX MOL HOW TO#
See also specific tips in Support/Linux, Support/OS X, Support/Windows, for example how to create a Mac OSX native installer. zip or tar.gz format) and extract/uncompress only the Jmol.jar file to the folder of your choice.
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